Basic Information
VIS ID
TVIS30002401
Fusion event
HIV-LOC105371058 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3127839/3077838 (Hg38)
End
3127839/3077838 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371058
Nearest miRNA
hsa-mir-1225/Upstream/545833; hsa-mir-11401/Downstream/407543;
Nearest TSS
ENST00000527434/Upstream/9720; ENST00000444510/Downstream/852;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/18234, chr16-CpG: 146/Downstream/11194
Nearby gene
IL32(No orient, 8019)
Upstream sequence
agctcctacagcgggccttatcgtttgaggttgaggtgccactataccagcatggttccagataataggaacttttgccatacttcttattgtttctacc
Downstream sequence
atctgaccgttttgttcagaccagctgcacatagtgtggccgtggcacgcaggctgagaggtgcaatttaagctaaacatccccttaggggaccaattaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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