Basic Information
VIS ID
TVIS30002402
Fusion event
HIV-LOC105371058 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3129453/3079452 (Hg38)
End
3129453/3079452 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371058
Nearest miRNA
hsa-mir-1225/Upstream/547447; hsa-mir-11401/Downstream/405929;
Nearest TSS
ENST00000527434/Upstream/762; ENST00000444510/Downstream/7635;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/19848, chr16-CpG: 146/Downstream/9580
Nearby gene
ZSCAN10(No orient, 9438)
Upstream sequence
tttctatccaaattggcttttctgttaaccgttttaaaggtgtaggttctggaggcttaacagtggccaccatcaaaaatgatatcctaagccttggcgg
Downstream sequence
gaacttgtctttccaattgaagtggttctttcaaaccttgcaaattttttttctagtcacctaccagggacatgccccatttcatgcatgatatgttgac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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