VISDB Viral Integration Site DataBase

VIS ID

TVIS30002404

Fusion event

HIV-CLUAP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

3565973/3515973 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-181a-5p ; hsa-mir-324-3p ; hsa-mir-23b-3p ; hsa-mir-4701-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-874-5p ; hsa-mir-3189-5p ; hsa-mir-153-5p ; hsa-mir-6765-3p ; hsa-mir-1228-3p ; hsa-mir-4438 ; hsa-mir-5096 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-197-3p ; hsa-mir-4772-5p ; hsa-mir-1273f ; hsa-mir-383-5p ; hsa-mir-4716-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6890-5p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-6867-3p ; hsa-mir-6749-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-642a-5p ; hsa-mir-3671 ; hsa-mir-570-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6832-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-6884-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-7151-5p ; hsa-mir-6878-3p ; hsa-mir-4674 ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-4437 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-378g ; hsa-mir-532-3p ; hsa-mir-212-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-1224-3p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6813-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-5571-3p ; hsa-mir-2355-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-1281 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4485-5p ; hsa-mir-6778-3p

Nearest miRNA

hsa-mir-1225/Upstream/30504; hsa-mir-11401/Downstream/1155345;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/14699, chr16-CpG: 32/Downstream/47126

Upstream sequence

ttattttgtttaaccaattcctcactgcttagtatttaaatgatttcagggttttctaaattccagacagcactgtaataagtaGAAGGATCACTATTGT

Downstream sequence

TTACTGCTCGCTCACATCAGTTATCCTCTCATCTAAAGCAGTCAGTTGGAAGGCAGATCATGAGGGTgactctagactcagattgcttgggtttgaattc