Basic Information
VIS ID
TVIS30002411
Fusion event
HIV-DNASE1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3686108/3636107 (Hg38)
End
3686108/3636107 (Hg38)
Orient
+
Location type
Intronic
Target gene
DNASE1
Nearest miRNA
hsa-mir-1225/Upstream/150638; hsa-mir-11401/Downstream/1035211;
Nearest TSS
ENST00000527434/Upstream/24379; ENST00000570761/Downstream/6773;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/24333, chr16-CpG: 38/Downstream/38236
Nearby gene
DNASE1(No orient, 16832)
Upstream sequence
gtttcagatactttttctgctcatttctgcctgtcatcatcttctggattcccattatgcatatttatgcctttctaattgtcccacagttcttggatat
Downstream sequence
tctgttccatcttgttcattcttttctctctgagtttcagtttgggaagttgctactgacattttttttcaagctcattgattctttcctttgactgtat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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