Basic Information
VIS ID
TVIS30002424
Fusion event
HIV-ATF7IP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
10556393/10462536 (Hg38)
End
10556393/10462536 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATF7IP2
miRNAs that regulate target gene
hsa-mir-181a-5p ; hsa-mir-7-5p ; hsa-mir-3613-3p ; hsa-mir-4775 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-590-3p ; hsa-mir-548c-3p
Nearest miRNA
hsa-mir-1225/Upstream/4829970; hsa-mir-11401/Downstream/843904;
Nearest TSS
ENST00000527434/Upstream/8514; ENST00000565450/Downstream/9388;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/76139, chr16-CpG: 86/Downstream/117487
Upstream sequence
ttgtcttaattttgaagggtattttaacttgggtatagaattagaggttggcagttatttttctttcagcactttcattttcatcacattgctttctgac
Downstream sequence
ttctatttctgttgaaatgttttaacatttgttttatttttgctttttcaaagataagtctctagctgcttttaagatcctctactttggttttcatcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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