Basic Information
VIS ID
TVIS30002425
Fusion event
HIV-LOC105371082 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
11380130/11286273 (Hg38)
End
11380130/11286273 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371082
Nearest miRNA
hsa-mir-1225/Upstream/5653707; hsa-mir-11401/Downstream/20167;
Nearest TSS
ENST00000527434/Upstream/4923; ENST00000572992/Downstream/26627;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/9909, chr16-CpG: 78/Downstream/59056
Nearby gene
PRM1(No orient, 4938)
Upstream sequence
tgttgaatgagttatttccatgaacagaaAGAAAACAatgtctgtaatcctagcactttaggaggccaaggtgggtgggtcgcttgagcccaggagttca
Downstream sequence
agaccagctcgggcaacatggtgaaattccctctctacaaattatacaaaaattagctggatatggtgatatgcacctgtagttccagctatgctggtgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate