Basic Information
VIS ID
TVIS30002426
Fusion event
HIV-ZC3H7A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
11860025/11766169 (Hg38)
End
11860025/11766169 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZC3H7A
miRNAs that regulate target gene
hsa-mir-93-5p
Nearest miRNA
hsa-mir-1225/Upstream/459642; hsa-mir-11401/Downstream/954152;
Nearest TSS
ENST00000527434/Upstream/608; ENST00000615722/Downstream/2352;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/22933, chr16-CpG: 88/Downstream/30299
Upstream sequence
TGATTCTCTCATGGACCACACCTCAGCTGAAAAAAAAAAAAATCATTTAGGGACATTCTAAGCTCATTCACACAAACTTGTTTGACAAACATGAAAATAC
Downstream sequence
CAAGTTCTCTCAAAAGCATCTTAAACACTTTTCAAAGCCTTAGCTCAGTGTTTTGATTCTGTTTAGAGAGAACTTAAGGTTTGAGACAGTCTTCTGTTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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