Basic Information
VIS ID
TVIS30002435
Fusion event
HIV-VPS35L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
19673042/19661720 (Hg38)
End
19673042/19661720 (Hg38)
Orient
-
Location type
Intronic
Target gene
VPS35L
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-1180-3p
Nearest miRNA
hsa-mir-1225/Upstream/1167144; hsa-mir-11401/Downstream/1844329;
Nearest TSS
ENST00000527434/Upstream/13873; ENST00000566850/Downstream/29736;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/105654, chr16-CpG: 84/Downstream/56152
Upstream sequence
GCTTCAAGCCTGAAGTCTGACTCATTTCATGGAGAAGCTAATTAGAGAGGACCCTTCCCGCCATCCTCACGGTGCAGTGCAGAACAGCATCCCTGGTTGG
Downstream sequence
TCCCCACAGTGTGTGTATCACCCCTCAGCTTGGTGCTGTGCCTTACACATACAGGGAACTGGGGTGGCTGCCCCTTAGAACAGCAGGAGTATTAAGAGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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