Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30002443
Basic Information
VIS ID
TVIS30002443
Fusion event
HIV-RBBP6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
24553341/24542020 (Hg38)
End
24553341/24542020 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16E
Target gene
RBBP6
miRNAs that regulate target gene
hsa-mir-1254
;
hsa-mir-149-5p
;
hsa-let-7b-5p
;
hsa-mir-323a-5p
;
hsa-mir-876-3p
;
hsa-mir-4747-3p
;
hsa-mir-1295b-3p
;
hsa-mir-5692a
;
hsa-mir-548c-3p
;
hsa-mir-3129-3p
;
hsa-mir-5583-5p
;
hsa-mir-6793-3p
;
hsa-mir-15a-5p
;
hsa-mir-16-5p
;
hsa-mir-16-2-3p
;
hsa-mir-15b-5p
;
hsa-mir-195-5p
;
hsa-mir-195-3p
;
hsa-mir-424-5p
;
hsa-mir-497-5p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-3942-5p
;
hsa-mir-3944-5p
;
hsa-mir-4703-5p
;
hsa-mir-6838-5p
;
hsa-mir-7856-5p
;
hsa-mir-193a-5p
;
hsa-mir-1182
;
hsa-mir-520a-3p
;
hsa-mir-372-3p
;
hsa-mir-520e
;
hsa-mir-520d-3p
;
hsa-mir-302b-3p
;
hsa-mir-302c-3p
;
hsa-mir-520c-3p
;
hsa-mir-302e
;
hsa-mir-302d-3p
;
hsa-mir-302a-3p
;
hsa-mir-520b
;
hsa-mir-373-3p
;
hsa-mir-107
;
hsa-mir-103a-3p
Nearest miRNA
hsa-mir-1225/Upstream/338789; hsa-mir-11401/Downstream/1483217;
Nearest TSS
ENST00000527434/Upstream/1437;
ENST00000613729/Downstream/10973;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/1641
,
chr16-CpG: 97/Downstream/187325
Upstream sequence
AGGTAGAGTAAATCTTGTCATGTAGAAGACCAGTTTTCCATTTACAATGCAGACCTAAGTATAATTGTATTAGGTTAAGGAACAGCAGTGCTGGCATATC
Downstream sequence
ATGACTCAAAAATATTAAGGAAGAATTTATTTGCTCAAATGATATTATGTGAAAATACTGTCTGCTTCCCCACCTTTTAAAAACAAGTGTCATACCCTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate