Basic Information
VIS ID
TVIS30002453
Fusion event
HIV-XPO6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
28165681/28154360 (Hg38)
End
28165681/28154360 (Hg38)
Orient
+
Location type
Intronic
Target gene
XPO6
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-122-5p ; hsa-mir-324-5p ; hsa-mir-320a ; hsa-mir-185-5p ; hsa-mir-222-3p ; hsa-mir-181b-5p ; hsa-mir-16-5p ; hsa-mir-4260 ; hsa-mir-1227-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-6825-5p ; hsa-mir-3180 ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-3188 ; hsa-mir-1273e ; hsa-mir-7847-3p ; hsa-mir-885-3p ; hsa-mir-31-5p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-6820-5p ; hsa-mir-2467-3p ; hsa-mir-1827 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-576-3p
Nearest miRNA
hsa-mir-1225/Upstream/2129050; hsa-mir-11401/Downstream/236622;
Nearest TSS
ENST00000527434/Upstream/1151; ENST00000635780/Downstream/1615;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/90385, chr16-CpG: 100/Downstream/56840
Upstream sequence
aaaaaaaaaaaaaaaaaaaGCCATGGGCTAAATACAGAACAATCTCAATTTTACTTTAGTATCTAACCCAATTTTTTAAAAATACAAACAAGGCTGTTCA
Downstream sequence
GTAGCTAAAACTACAGATTTTATTTCACCTCATTTTCTTTCCCTTGCCCACCTTCTGGTACAGGTGCTAATGAACAGTAGAAAGTTAGGGGAAAAGGCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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