Basic Information
VIS ID
TVIS30002471
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29795245/29783924 (Hg38)
End
29795245/29783924 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/184659; hsa-mir-11401/Downstream/719995;
Nearest TSS
ENST00000527434/Upstream/5684; ENST00000570173/Downstream/6795;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/88787, chr16-CpG: 36/Downstream/1116
Nearby gene
ZG16(No orient, 2276)
Upstream sequence
cctgttcgtacaccccctccccttttgaaatccttaataaaaacttgctggttttgcggctcaggtggggcattatggacctaccgatatgtgatgtcac
Downstream sequence
cccccaccagcccagctgtaaaattcctatctttgtactctttctttttatttctcagaccggccaacacttagggaaaatagaaagaacctacgctgaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate