Basic Information
VIS ID
TVIS30002472
Fusion event
HIV-KIF22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29804154/29792833 (Hg38)
End
29804154/29792833 (Hg38)
Orient
+
Location type
Intronic
Target gene
KIF22
miRNAs that regulate target gene
hsa-mir-146a-5p ; hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-25-5p ; hsa-mir-149-5p ; hsa-mir-23a-3p
Nearest miRNA
hsa-mir-1225/Upstream/193568; hsa-mir-11401/Downstream/711086;
Nearest TSS
ENST00000527434/Upstream/1862; ENST00000563666/Downstream/4053;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1836, chr16-CpG: 267/Downstream/12093
Upstream sequence
atgcagatattctagggagagagattaacgtggacaaaaatccaaaggtgcaagagaacttggagttttgtaggaagtgaaggaaattcatcatgactgg
Downstream sequence
taacttacactgcaaggaaggaaacagagggaatgactagagggcagggagacaccttgctaccaccagcaaggaaggctgtaaagaccatgaccttggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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