VISDB Viral Integration Site DataBase

VIS ID

TVIS30002491

Fusion event

HIV-NETO2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q12.1

Reference genome

Start

End

47165917/47132006 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-375 ; hsa-mir-24-3p ; hsa-mir-21-5p ; hsa-mir-20a-5p ; hsa-mir-4480 ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-526b-5p ; hsa-mir-3190-3p ; hsa-mir-143-5p ; hsa-mir-382-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-106b-5p ; hsa-mir-519d-3p ; hsa-mir-17-5p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-1229-3p ; hsa-mir-7160-3p ; hsa-mir-342-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-3924 ; hsa-mir-203a-3p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4495 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-424-3p ; hsa-mir-548ad-3p ; hsa-mir-4284 ; hsa-mir-4755-3p ; hsa-mir-4493 ; hsa-mir-4753-5p

Nearest miRNA

hsa-mir-1225/Upstream/12968333; hsa-mir-11401/Downstream/3160610;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/93747, chr16-CpG: 48/Downstream/328780

Upstream sequence

CTTTCAAATAAGCCAGTCCATTGTCTTAAACATGCAGTAAGTCACCAATGTAAGTACTTTACCTTGGGTTTTTTGGGCCACGGCAATCCCTTCCACTACC

Downstream sequence

AGTACTGTTATTAACAACACTAGAGAAATAACAGAGAAGAAAAGTTATGAAATTGAATCTATACTACATTTTACTAAGTCAATAAATAAAATTGGATGAC