VISDB Viral Integration Site DataBase

VIS ID

TVIS30002495

Fusion event

HIV-TENT4B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q12.1

Reference genome

Start

End

50265183/50231272 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-769-3p ; hsa-mir-186-5p ; hsa-mir-10a-5p ; hsa-mir-96-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-4755-5p ; hsa-mir-5006-3p ; hsa-mir-380-3p ; hsa-mir-4317 ; hsa-mir-4641 ; hsa-mir-642a-5p ; hsa-mir-2276-5p ; hsa-mir-6792-5p ; hsa-mir-6892-3p ; hsa-mir-3163 ; hsa-mir-129-5p ; hsa-mir-3916 ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-3924 ; hsa-mir-410-3p ; hsa-mir-1278 ; hsa-mir-6516-3p ; hsa-mir-196b-3p ; hsa-mir-383-3p ; hsa-mir-302f ; hsa-mir-570-3p ; hsa-mir-625-3p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-6759-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6885-3p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-6872-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-328-5p ; hsa-mir-625-5p ; hsa-mir-6795-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-7109-5p

Nearest miRNA

hsa-mir-1225/Upstream/16067599; hsa-mir-11401/Downstream/61344;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/76884, chr16-CpG: 69/Downstream/14545

Upstream sequence

CAAATGTGATGTTATTTTGACAATGTTTTAAATTTTAGAGTCACATTTTATTCTGATCAGAATTTTTATTGAGATGTTGAGCTTTTGTTTTTGAAACTAG

Downstream sequence

TTTGTCATAACATTGTGCATAATCACAGTATTTATTTTCTAGGACAATTGTGAATGTGTAGACTTATGTTTACTGCTAAGGGAACaattatttataaaat