Basic Information
VIS ID
TVIS30002499
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
50716630/50682719 (Hg38)
End
50716630/50682719 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/390044; hsa-mir-11401/Downstream/59586;
Nearest TSS
ENST00000527434/Upstream/1366; ENST00000531674/Downstream/10869;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/8589, chr16-CpG: 110/Downstream/58995
Nearby gene
SNX20(No orient, 1366)
Upstream sequence
tatctgaggtgaaattgctgggtctcagagtatagatagcttcaactgtgctagattacgccaaatattttccacagtggctgtgccattttgtattccc
Downstream sequence
accagcagtatatgagaattccaggtgctccaccttcttacctgcacttgatatggtcattattataattattttaaagatggggtcttgctctatcacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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