VISDB Viral Integration Site DataBase

VIS ID

TVIS30002509

Fusion event

HIV-NUP93 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q13

Reference genome

Start

End

56832758/56798846 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-125b-5p ; hsa-mir-3149 ; hsa-mir-4715-3p ; hsa-mir-4763-5p ; hsa-mir-29a-5p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6872-3p ; hsa-let-7c-3p ; hsa-mir-4266 ; hsa-mir-3177-5p ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-3922-5p ; hsa-mir-1914-3p ; hsa-mir-6782-5p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-4274 ; hsa-mir-624-3p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-7703 ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-193b-5p ; hsa-mir-4252 ; hsa-mir-7155-5p ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-4438 ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-3681-3p ; hsa-mir-6081 ; hsa-mir-6750-3p

Nearest miRNA

hsa-mir-1225/Upstream/553223; hsa-mir-11401/Downstream/59672;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/68281, chr16-CpG: 80/Downstream/132976

Upstream sequence

tggtcccagctactccggtggttgtgggagaattgcttgaacctgggaggtagaggcttgagtgagccgagtcgcgccactgcacttcatcctgggggac

Downstream sequence

agaatgaggagcgagaccctgtctcaaaaaaaaaaaaaaaaGCAGATGAAGGGTAGCAGTATATACTAGGGGAGTGTGGGATCTGGAAGCTGGAATCTAT