Basic Information
VIS ID
TVIS30002514
Fusion event
HIV-RSPRY1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q13
Reference genome
GRCh37/hg19
Start
57264586/57230674 (Hg38)
End
57264586/57230674 (Hg38)
Orient
-
Location type
Intronic
Target gene
RSPRY1
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-21-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1225/Upstream/326321; hsa-mir-11401/Downstream/541615;
Nearest TSS
ENST00000527434/Upstream/6252; ENST00000565794/Downstream/14424;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/44003, chr16-CpG: 70/Downstream/14220
Upstream sequence
AAACAAAAATTAACATGTTGAATGCATAGCTAAAGATGCAGACTTAATACAGTGCCATTGAAACACTTGAGATGCTTAGCAAAGAATCCTGGTAGTACAC
Downstream sequence
ATCATTATCCTAACAGTGTTTCTCTTTATCCTCTAGGAGATACAGTAGGATTTCTGTTAGACTTGAATGAAAAGCAAATGATCTTCTTTTTAAATGGCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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