Fusion event
HIV-chr16 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
66244701/66210798 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/8438446; hsa-mir-11401/Downstream/991523;
Nearest cancer related gene
CDH5(TSG, No orient, 155809)
Upstream sequence
tttttcgtagagacagggtctcaccatgttaacgaggatggtctcgaactcctaggctcaagcagtcctcccatctcaactcccaaaatgctgggattac
Downstream sequence
aggcatgagccactgtacccagcTTTAGTCTTTTTTGAATAAATGAATCTATCCTTGTGGCAACACTACATCAATGCCTAACTCTATGCCCTGATCACAT
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.