Basic Information
VIS ID
TVIS30002526
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
67589730/67555827 (Hg38)
End
67589730/67555827 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA16B
Nearest miRNA
hsa-mir-1225/Upstream/353432; hsa-mir-11401/Downstream/677599;
Nearest TSS
ENST00000527434/Upstream/6094; ENST00000642847/Downstream/6482;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/17002, chr16-CpG: 176/Downstream/6138
Nearby gene
CTCF(No orient, 6580)
Nearest cancer related gene
CTCF(TSG, No orient, 6580)
Upstream sequence
GGCAGTTGATGTTGGCAGACAATGAAAGCTTTCCAAATGTCTTTAAAGGTTTAGCATCACTACTCTACACCCTCATCCAATGGTGTAAGATGACTCGCTG
Downstream sequence
TCCCCCAAATACTCTTGTAGACTTTTATGCCTTTGATCATGGCTCTTCACCTTACATGTCTTCGTGTCACTTGTTAATGCTTTGCTAATCCTTTAGACCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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