Basic Information
VIS ID
TVIS30002527
Fusion event
HIV-LOC107984813 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
67595081/67561178 (Hg38)
End
67595081/67561178 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA16B
Target gene
LOC107984813
Nearest miRNA
hsa-mir-1225/Upstream/358783; hsa-mir-11401/Downstream/672248;
Nearest TSS
ENST00000527434/Upstream/11445; ENST00000642847/Downstream/1131;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/22353, chr16-CpG: 176/Downstream/787
Nearby gene
CTCF(No orient, 1229)
Upstream sequence
tgcaaggtgacccaatccaatagccacatctctggcccaagtttatcacaccgctcagctgatgcctcctacctgaaaccttctctgcccagggattcca
Downstream sequence
caactcagcgctagctttcatgacttcctagatgctgcctttcagactccttctccattaccctcccaatattggagtgccccaggatttggccatggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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