Basic Information
VIS ID
TVIS30002551
Fusion event
HIV-NFAT5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
End
69603510/69569607 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-31-5p ; hsa-mir-24-3p ; hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-877-5p ; hsa-mir-652-3p ; hsa-mir-17-5p ; hsa-mir-211-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-4690-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-103a-2-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-580-5p ; hsa-mir-651-3p ; hsa-mir-889-3p ; hsa-mir-1252-5p ; hsa-mir-4476 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6815-3p ; hsa-mir-6826-5p ; hsa-mir-6876-5p ; hsa-mir-3910 ; hsa-mir-548an ; hsa-mir-1468-3p ; hsa-mir-548p ; hsa-mir-921 ; hsa-mir-3174 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-6507-3p ; hsa-mir-4796-3p ; hsa-mir-374a-5p ; hsa-mir-155-5p ; hsa-mir-7111-5p ; hsa-mir-6883-5p ; hsa-mir-6825-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-766-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-1827 ; hsa-mir-4419a ; hsa-mir-5681a ; hsa-mir-205-5p ; hsa-mir-4536-5p ; hsa-mir-6770-5p ; hsa-mir-6073 ; hsa-mir-1253 ; hsa-mir-552-3p ; hsa-mir-6768-5p ; hsa-mir-6505-5p ; hsa-mir-6844 ; hsa-mir-9-5p ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-6124 ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-3202 ; hsa-mir-4756-5p ; hsa-mir-3179 ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6760-5p ; hsa-mir-6873-5p ; hsa-mir-4797-3p ; hsa-mir-6512-5p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4261 ; hsa-mir-4496 ; hsa-mir-146a-5p ; hsa-mir-3180-5p ; hsa-mir-345-5p ; hsa-mir-4256 ; hsa-mir-4706 ; hsa-mir-4749-5p ; hsa-mir-4762-3p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-6731-3p ; hsa-mir-744-5p ; hsa-mir-1273h-5p ; hsa-mir-17-3p ; hsa-mir-30b-3p ; hsa-mir-3160-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3689d ; hsa-mir-4311 ; hsa-mir-4443 ; hsa-mir-4487 ; hsa-mir-485-5p ; hsa-mir-490-3p ; hsa-mir-558 ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-6884-5p ; hsa-mir-7106-5p ; hsa-mir-7847-3p ; hsa-mir-7851-3p
Nearest miRNA
hsa-mir-1225/Upstream/3739; hsa-mir-11401/Downstream/363474;
Upstream sequence
agtccgggatagtggggggcaagtgggttttgtagttgagcttaaatttgaataccaacttagctccttattagttctgtgacttcgggcaagtgatttt
Downstream sequence
acctctctaaactttaatattcttcctgttaaaatgtagctgtctcttaaatttagtgagctaatgtgtattaaattgcctagcatagcgtctagcttaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate