VISDB Viral Integration Site DataBase

VIS ID

TVIS30002558

Fusion event

HIV-DDX19B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q22.1

Reference genome

Start

End

70333698/70299795 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7150 ; hsa-mir-4536-5p ; hsa-mir-4451 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-6716-5p ; hsa-mir-548au-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-6783-5p ; hsa-mir-4733-3p ; hsa-mir-6753-5p ; hsa-mir-3149 ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6832-3p ; hsa-mir-6807-5p ; hsa-mir-4252 ; hsa-mir-199b-5p ; hsa-mir-3130-3p ; hsa-mir-199a-5p ; hsa-mir-1273g-3p ; hsa-mir-500b-3p ; hsa-mir-3130-5p ; hsa-mir-4482-5p ; hsa-mir-3152-5p ; hsa-mir-6836-3p ; hsa-mir-4284 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-6778-3p ; hsa-mir-6726-3p ; hsa-mir-378a-5p ; hsa-mir-4707-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-4755-3p ; hsa-mir-3653-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1227-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-431-3p ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-101-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3192-5p ; hsa-mir-3612 ; hsa-mir-4257 ; hsa-mir-4537 ; hsa-mir-490-3p ; hsa-mir-582-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-655-5p ; hsa-mir-7851-3p

Nearest miRNA

hsa-mir-1225/Upstream/269373; hsa-mir-11401/Downstream/6569141;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/10209, chr16-CpG: 39/Downstream/46941

Upstream sequence

ggtctcaagctatcttcctgcctcggcctttcaaagcaccaggattacaggctgagccattgttcctggccGccccggtttgtaatagttattttaggtg

Downstream sequence

tcattctccacctctacattcagagcttctttggctcagggaccatgtctttgctcatatttgtgtgcttcctcagtgataaatgatggacccagtaggt