Basic Information
VIS ID
TVIS30002560
Fusion event
HIV-LINC01572 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.2
Reference genome
End
72506171/72472272 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/2441850; hsa-mir-11401/Downstream/4396664;
Upstream sequence
TAAATTTGGTTTAAAAATGCTCAGTAATGTTGCAATGAGGGTGAATGATAAGACCGATGGAAAATATGTGAATGTTACAATATGCAAATACTCCAAGGAG
Downstream sequence
CTATAAAGAGAGTTCAGCCAGTAAGGTATTCTAGCTTTAAAAAACAATATTTTTCTTATTCCAAAGCTCAGTGACAAACAGATGAAAAGTAAAAATTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate