VISDB Viral Integration Site DataBase

VIS ID

TVIS30002561

Fusion event

HIV-GLG1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q23.1

Reference genome

Start

End

74590169/74556271 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-21-5p ; hsa-mir-26a-5p ; hsa-mir-218-5p ; hsa-mir-5584-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-766-5p ; hsa-mir-3202 ; hsa-mir-5093 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-1827 ; hsa-mir-7515 ; hsa-mir-9500 ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-4695-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6851-5p ; hsa-mir-6836-5p ; hsa-mir-3689d ; hsa-mir-6132 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-3160-3p ; hsa-mir-6840-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4252 ; hsa-mir-6499-3p ; hsa-mir-891a-5p ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-7156-3p ; hsa-mir-7641 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-4695-3p ; hsa-mir-4679 ; hsa-mir-4691-3p ; hsa-mir-194-3p ; hsa-mir-2682-3p ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-3677-5p ; hsa-mir-4276 ; hsa-mir-4493 ; hsa-mir-4757-5p ; hsa-mir-5693 ; hsa-mir-627-3p ; hsa-mir-6744-3p ; hsa-mir-6781-3p ; hsa-mir-6878-3p

Nearest miRNA

hsa-mir-1225/Upstream/4525849; hsa-mir-11401/Downstream/2312665;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/148778, chr16-CpG: 67/Downstream/50299

Upstream sequence

TTACAAATTCCTAAATCACAAAATGTCCCTCTTACTCTTACTATAACAAAGTGAAATAGTCCTACAGGAAAGATCCATTACAATAAGATATACAGTTAGG

Downstream sequence

TGCTGGAAACAAGCAACAGTAAGTAGCTATTGATTATCTTACCATTTTACAATAAATCATGACTTTAAATACTTTACTAGAAAATTTAAAGTTCTTTGAC