VISDB Viral Integration Site DataBase

VIS ID

TVIS30002562

Fusion event

HIV-MAF integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q23.2

Reference genome

Start

End

79627234/79593337 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-621 ; hsa-mir-302c-5p ; hsa-mir-6798-3p ; hsa-mir-3143 ; hsa-mir-4640-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-618 ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-4531 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-10b-3p ; hsa-mir-205-3p ; hsa-mir-6514-5p ; hsa-mir-4802-5p ; hsa-mir-451b ; hsa-mir-486-3p ; hsa-mir-212-5p ; hsa-mir-147a ; hsa-mir-210-3p ; hsa-mir-3151-5p ; hsa-mir-342-5p ; hsa-mir-3621 ; hsa-mir-3650 ; hsa-mir-3656 ; hsa-mir-3911 ; hsa-mir-4447 ; hsa-mir-4455 ; hsa-mir-4472 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-491-5p ; hsa-mir-574-5p ; hsa-mir-608 ; hsa-mir-644a ; hsa-mir-6737-5p ; hsa-mir-6742-5p ; hsa-mir-6747-5p ; hsa-mir-6796-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6867-5p

Nearest miRNA

hsa-mir-1225/Upstream/2724318; hsa-mir-11401/Downstream/1791681;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/3277, chr16-CpG: 246/Downstream/5385

Nearby gene

MAF(No orient, 511)

Nearest cancer related gene

MAF(OG, No orient, 0)

Upstream sequence

ACGGCCACAGCAGCAAAAGCCTCCCAATGTACTGTGCTTGGGAACCTTTGAACGTGTCATAGGCAACTCTAGATATTTAGACCAGGACATGCTGGGAATG

Downstream sequence

CAGCTACCGAGACAGCTGTGTGCCATGTTTGTGAGGGTGACCATGATCTGTCTTCTGTCCACTGCTTTTAGCAGGAAAACTGGCAGTGTGGCAAGGGGGT