Basic Information
VIS ID
TVIS30002564
Fusion event
HIV-ATP2C2-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
84500904/84467298 (Hg38)
End
84500904/84467298 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP2C2-AS1
Nearest miRNA
hsa-mir-1225/Upstream/958890; hsa-mir-11401/Downstream/740498;
Nearest TSS
ENST00000527434/Upstream/6535; ENST00000568771/Downstream/63;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/98407, chr16-CpG: 17/Downstream/37980
Nearby gene
ATP2C2(No orient, 3111)
Upstream sequence
TTAAGACACAGATAAACTTGTTCTAACAAGCTTGGTATGATATTGTTATCAGCAGACCTATTTCAATTTCACTGGTTTTTACATAGTATCTGATGTTAGG
Downstream sequence
CAAACCTGAGTTTAAGGGCACAGTGCTCCAGGTGGCTGGCCAAGTCTGCCCAGGCcttctgatactgactgcaggtccaagagtttcccacaaccacctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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