Basic Information
VIS ID
TVIS30002565
Fusion event
HIV-COTL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
84647278/84613672 (Hg38)
End
84647278/84613672 (Hg38)
Orient
-
Location type
Intronic
Target gene
COTL1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-1-3p ; hsa-mir-744-5p ; hsa-mir-331-3p ; hsa-mir-320a ; hsa-mir-506-3p ; hsa-mir-1205 ; hsa-mir-1273h-3p ; hsa-mir-127-3p ; hsa-mir-1286 ; hsa-mir-147a ; hsa-mir-3166 ; hsa-mir-3169 ; hsa-mir-3612 ; hsa-mir-3911 ; hsa-mir-3936 ; hsa-mir-4418 ; hsa-mir-4459 ; hsa-mir-449b-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4740-5p ; hsa-mir-4755-3p ; hsa-mir-4771 ; hsa-mir-4786-3p ; hsa-mir-5006-5p ; hsa-mir-501-5p ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-548ad-3p ; hsa-mir-6124 ; hsa-mir-644a ; hsa-mir-650 ; hsa-mir-6890-3p ; hsa-mir-7843-3p ; hsa-mir-873-5p
Nearest miRNA
hsa-mir-1225/Upstream/1105264; hsa-mir-11401/Downstream/594124;
Nearest TSS
ENST00000527434/Upstream/19279; ENST00000565743/Downstream/3887;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/108163, chr16-CpG: 119/Downstream/3682
Upstream sequence
GGCAGAAgggagccatagaaggttaatgagcagaggagtgacttgattagaaatgtactgtagaaagaattaccccagcAAGGGAGGACAGAGTGGATAC
Downstream sequence
CAGACAAGGAAGATTAAGGGCAAATAGACTGTTGCTATGAAGAGGAAAGCAGAGATGTTAAGGGGCAAATGGACACTTTTGTGAAAGTGGCATGCCattc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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