Basic Information
VIS ID
TVIS30002569
Fusion event
HIV-ZC3H18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
88676791/88610383 (Hg38)
End
88676791/88610383 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZC3H18
miRNAs that regulate target gene
hsa-mir-1914-3p ; hsa-mir-29b-2-5p ; hsa-mir-93-3p ; hsa-mir-484 ; hsa-mir-18b-5p ; hsa-mir-106b-5p ; hsa-mir-218-5p ; hsa-mir-183-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-18a-5p ; hsa-mir-17-5p ; hsa-let-7f-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-mir-11401/Upstream/141352; hsa-mir-4722/Downstream/105895;
Nearest TSS
ENST00000527434/Upstream/1866; ENST00000563382/Downstream/13660;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/39458, chr16-CpG: 26/Downstream/12676
Upstream sequence
AGGGACAGTCATGAGCTTTGAGGACCAGGTGCGGCTGTCTCCTCAGGAGCCCATCAGGGTGAGCTTGCAGAGGGAAGAGGGCCCCATCGTGCCAGAAAAG
Downstream sequence
TCCCCCTGCTCGATGCTCTTGTGCCCCGTCTCTCCATAAAGCAGCTTCCTCATTGCAGGTGGGCTGCAGGGTCCTGCTGCTTACCCCTGGGCAGGGTACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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