Basic Information
VIS ID
TVIS30002570
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
88864317/88797909 (Hg38)
End
88864317/88797909 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-11401/Upstream/81572;
Nearest TSS
ENST00000527434/Upstream/12689; ENST00000562747/Downstream/5304;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/12043, chr16-CpG: 113/Downstream/5463
Nearby gene
CDT1(No orient, 5869)
Upstream sequence
agccgggcgtgagggtgggcgctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagcaagccgagac
Downstream sequence
cgcgccattgcactccagcctgggcgacaagagcaaaactctgtctaaaaaaaaaaaaaaggatcatataattccatgaaaatggagcttccttgaaact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate