Basic Information
VIS ID
TVIS30002581
Fusion event
HIV-SPG7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
89583137/89516729 (Hg38)
End
89583137/89516729 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPG7
Nearest miRNA
hsa-mir-11401/Upstream/800392;
Nearest TSS
ENST00000527434/Upstream/3715; ENST00000611189/Downstream/68;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/7769, chr16-CpG: 27/Downstream/5679
Upstream sequence
gcgagcagatcacaaggtcaggagatcgagaccattttagctaacacggtgaaaccctgtctctactaaaaatacaaaaaaaaaaaaaaattaggcgtgg
Downstream sequence
tggtgggcacctgtaaccccagctagtcgggaggctgaggcaggagaatggcgtgaacccaagaggcgaagcttgcagtgagccgagatcgcgccactgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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