Basic Information
VIS ID
TVIS30002587
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
90036050/89969642 (Hg38)
End
90036050/89969642 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-11401/Upstream/1253305;
Nearest TSS
ENST00000527434/Upstream/5802; ENST00000564853/Downstream/2280;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/5310, chr16-CpG: 112/Downstream/2480
Nearby gene
CENPBD1(No orient, 133)
Upstream sequence
ttccagaccagcctgggcaacacacagactccttctctaccaaaataattagctggtggtggtggcatgtgcctgtagtcccaacactccagaggctgag
Downstream sequence
gtatgaggattgcttgaactttggaggtcgaggctacagtgaaccaagattgtgccactgcactccagcttcgatgatggagcgagaccgtctcaaagaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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