Basic Information
VIS ID
TVIS30002599
Fusion event
HIV-METTL16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2357882/2454588 (Hg38)
End
2357882/2454588 (Hg38)
Orient
+
Location type
Intronic
Target gene
METTL16
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-193b-3p ; hsa-mir-423-3p ; hsa-mir-92a-3p ; hsa-mir-1178-3p ; hsa-mir-3941 ; hsa-mir-4643 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-587 ; hsa-mir-3692-3p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-6509-3p ; hsa-mir-4436b-5p ; hsa-mir-3119 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-627-3p ; hsa-mir-6777-3p
Nearest miRNA
hsa-mir-132/Upstream/404208; hsa-mir-10226/Downstream/238273;
Nearest TSS
ENST00000595228/Upstream/34819; ENST00000571289/Downstream/23297;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/52398, chr17-CpG: 26/Downstream/57179
Upstream sequence
CTTTTATCCTATGCTCTTATAAGTGATTTTAATTATTCACTTTTTGACATGGATAAGACTATATTATTATTATTAtttttttttttttttttttgagacg
Downstream sequence
gagtcttgctcagccgcccagggtggagtgcagtggcatgatctcagctcactgcaaccactgtctcctgggttcaagcaattttcccatctcagcctcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate