VISDB Viral Integration Site DataBase

VIS ID

TVIS30002608

Fusion event

HIV-PAFAH1B1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

2528364/2625070 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-101-3p ; hsa-mir-18a-5p ; hsa-mir-100-5p ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-339-5p ; hsa-mir-548a-3p ; hsa-mir-616-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-1250-3p ; hsa-mir-548ar-3p ; hsa-mir-5582-3p ; hsa-mir-548az-3p ; hsa-mir-6732-3p ; hsa-mir-6771-3p ; hsa-mir-105-5p ; hsa-mir-7853-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-136-5p ; hsa-mir-885-5p ; hsa-mir-607 ; hsa-mir-3156-3p ; hsa-mir-3671 ; hsa-mir-630 ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-1537-5p ; hsa-mir-4742-3p ; hsa-mir-532-3p ; hsa-mir-4301 ; hsa-mir-483-3p

Nearest miRNA

hsa-mir-132/Upstream/574690; hsa-mir-10226/Downstream/67791;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/30341, chr17-CpG: 68/Downstream/64664

Nearest cancer related gene

PAFAH1B1(TSG, No orient, 0)

Upstream sequence

ATTTTCATGTCATTGCGCCTCTACTGTTAACatataattatttatactttctatttttttttttttaaCTCTTCCACTTTCTCTTTTTGTGGTGGGGTAC

Downstream sequence

TTACCCTAGCAATAAACACATTGTTGTCTTAGATGCTGCATTGGATAGCAGATACGTGGATATAGTATTAGACTAGAGAATGCTTAAGAATTCTGCATTC