Basic Information
VIS ID
TVIS30002612
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3230000/3326706 (Hg38)
End
3230000/3326706 (Hg38)
Orient
+
Location type
Intronic
Target gene
OR3A1 ; OR3A2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-335-5p
Nearest miRNA
hsa-mir-1253/Upstream/578524; hsa-mir-10226/Downstream/1642996;
Nearest TSS
ENST00000595228/Upstream/28346; ENST00000572493/Downstream/59224;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/277627, chr17-CpG: 81/Downstream/59362
Nearby gene
OR3A4P(No orient, 15260)
Upstream sequence
gtcagttacatatgtatacatgtgccatgctggtgtgctgcacccactaactcgtcatctagtattaggtatatctcccaatgctatccctcccccctcc
Downstream sequence
ccccactccaccacagtccccacagtgtgatattccccttcctgtgtccatgtgatctcattgttcaattcccacctatgagtgagaatatgcagtgttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate