Basic Information
VIS ID
TVIS30002613
Fusion event
HIV-ITGAE integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
3692339/3789045 (Hg38)
End
3692339/3789045 (Hg38)
Orient
+
Location type
Intronic
Target gene
ITGAE
Nearest miRNA
hsa-mir-1253/Upstream/1040863; hsa-mir-10226/Downstream/1180657;
Nearest TSS
ENST00000595228/Upstream/34349; ENST00000571890/Downstream/12198;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/33654, chr17-CpG: 76/Downstream/56799
Upstream sequence
AGAGAAAAATAAAAACAaaagaaatcaaggtgactcacgcctgtaatcccagcactttgggaggctgaggtgggaggatcacttacactcgggagctcaa
Downstream sequence
gaccaacctgggcaatacagtgagactccgtttctacaaaaaaattaaaaaattagctgcacacagtggagcctgcctgtggtcctagctacttgggagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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