Basic Information
VIS ID
TVIS30002615
Fusion event
HIV-ZZEF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
4015741/4112447 (Hg38)
End
4015741/4112447 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZZEF1
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-125a-5p ; hsa-mir-16-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1253/Upstream/1364265; hsa-mir-10226/Downstream/857255;
Nearest TSS
ENST00000595228/Upstream/37267; ENST00000577075/Downstream/30573;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/107364, chr17-CpG: 78/Downstream/30051
Upstream sequence
gttggccaggctgttttcgaactcctgatctcaagtgattcacctgccttggcctcccaaagtgctgggattacaggcgtgagccagcatgcccCGACGC
Downstream sequence
TTTTCTATAATTTCTACAACACTTAATGAATGAAATAATGAACACTTTTGTGTACGTCCTAAGAAGCAAACCGAATCTCAAAAACTAACAGCCTCTTCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate