VISDB Viral Integration Site DataBase

VIS ID

TVIS30002624

Fusion event

HIV-ZBTB4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

7362785/7459466 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-122-5p ; hsa-mir-19b-3p ; hsa-mir-1226-3p ; hsa-mir-454-3p ; hsa-mir-652-3p ; hsa-mir-615-3p ; hsa-mir-331-3p ; hsa-mir-186-5p ; hsa-mir-181b-5p ; hsa-mir-30d-5p ; hsa-mir-99a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-1236-5p ; hsa-mir-483-3p ; hsa-mir-484 ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-6847-5p ; hsa-mir-20a-5p ; hsa-mir-3915 ; hsa-mir-4711-3p ; hsa-mir-431-5p ; hsa-mir-671-5p ; hsa-mir-7160-5p ; hsa-mir-6828-5p ; hsa-mir-3928-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-7108-5p ; hsa-mir-548s ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-7974 ; hsa-mir-663b ; hsa-mir-3926 ; hsa-mir-4524a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-4311 ; hsa-mir-519a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-766-5p ; hsa-mir-1252-5p ; hsa-mir-4433b-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-1253/Upstream/236087; hsa-mir-10226/Downstream/628590;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/13955, chr17-CpG: 25/Downstream/3138

Nearest cancer related gene

ZBTB4(TSG, No orient, 0)

Upstream sequence

GTGGAGCACAGTTCATTTGTCTTGTTGGTTTATTGGCCTACAGAGTTGGACACACACACAAATGCGGAGATAAATATTGGTCAGTTTCTCTAAATCTGGG

Downstream sequence

TCCTCACTACGTATAGAGCTAGTCTGTAGAATTCTAAATTTTGCGTGCTGCGGCACAGAACCAGTGGCCTTCTCACTCTGCCACCACCCGTCTTCCCAGG