Basic Information
VIS ID
TVIS30002632
Fusion event
HIV-CNTROB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7839461/7936143 (Hg38)
End
7839461/7936143 (Hg38)
Orient
-
Location type
Intronic
Target gene
CNTROB
miRNAs that regulate target gene
hsa-mir-149-5p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-5699-5p ; hsa-mir-3655 ; hsa-mir-6793-3p ; hsa-mir-4762-5p ; hsa-mir-4632-3p ; hsa-mir-6746-3p
Nearest miRNA
hsa-mir-1253/Upstream/712764; hsa-mir-10226/Downstream/151913;
Nearest TSS
ENST00000595228/Upstream/467; ENST00000574430/Downstream/1060;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/3892, chr17-CpG: 33/Downstream/53869
Upstream sequence
AGTAACTTTGCACATTTTGCTGTGTGGGCTGCTGCATCTCTGCCAAAAGGTTTATGGGATTTTTACTCAGGAGATCCAGGAAAAGGAGGAGCCTGGAATC
Downstream sequence
TAAGCACTTATCTCCTGAAAAGGTACAGAAACATGTTGGAGATCTTGAGCCTCAAGGTGCTTGCTTCAGAATTTTCCTGATTCTCCCTCTCCAGACCTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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