VISDB Viral Integration Site DataBase

VIS ID

TVIS30002633

Fusion event

HIV-CTC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

8146757/8243439 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1274a ; hsa-mir-106b-3p ; hsa-mir-7-1-3p ; hsa-mir-93-3p ; hsa-mir-769-5p ; hsa-mir-421 ; hsa-mir-652-3p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-181d-5p ; hsa-mir-331-3p ; hsa-mir-29c-3p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-26a-5p ; hsa-mir-25-3p ; hsa-let-7e-5p ; hsa-mir-3615 ; hsa-mir-3676-3p ; hsa-mir-5682 ; hsa-mir-610 ; hsa-mir-6871-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-6506-5p ; hsa-mir-5089-5p ; hsa-mir-619-5p ; hsa-mir-3653-5p ; hsa-mir-1976 ; hsa-mir-6840-3p ; hsa-mir-1266-3p ; hsa-mir-4484 ; hsa-mir-6768-3p ; hsa-mir-548an ; hsa-mir-124-3p ; hsa-mir-28-3p ; hsa-mir-3175 ; hsa-mir-1290 ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-2277-5p ; hsa-mir-4479 ; hsa-mir-554 ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-1539 ; hsa-mir-1246 ; hsa-mir-4517 ; hsa-mir-4757-3p ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-585-5p ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-6813-3p ; hsa-mir-212-5p ; hsa-mir-4637 ; hsa-mir-3188 ; hsa-mir-6880-3p ; hsa-mir-6785-3p ; hsa-mir-6776-3p ; hsa-mir-552-5p ; hsa-mir-5590-5p ; hsa-mir-5585-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-4305 ; hsa-mir-22-3p ; hsa-mir-4524b-3p ; hsa-mir-2909 ; hsa-mir-1296-5p ; hsa-mir-181a-3p ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-5088-5p ; hsa-mir-3185 ; hsa-mir-3613-3p ; hsa-mir-3692-3p ; hsa-mir-874-3p ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-146b-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-18a-3p ; hsa-mir-6752-3p ; hsa-mir-4733-3p ; hsa-mir-371b-3p

Nearest miRNA

hsa-mir-1253/Upstream/56435; hsa-mir-10226/Downstream/3838460;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/20271, chr17-CpG: 32/Downstream/4369

Upstream sequence

tgaaaccctgtctctactaaaaacacaaaattagctgggggtggtggtgcacacctataattccagctacttgggaggctgaggcaggagaattgcttga

Downstream sequence

acccaggaggcggaggttgtggtgagccaagatcgagccattgcactccagcctgggcaacaagagggaaactccgtctcaaaaaaaaaaaaaagaaaag