Basic Information
VIS ID
TVIS30002638
Fusion event
HIV-STX8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
9388939/9485622 (Hg38)
End
9388939/9485622 (Hg38)
Orient
+
Location type
Intronic
Target gene
STX8
Nearest miRNA
hsa-mir-1253/Upstream/1298618; hsa-mir-10226/Downstream/2596277;
Nearest TSS
ENST00000595228/Upstream/20880; ENST00000574460/Downstream/6243;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/245100, chr17-CpG: 26/Downstream/90068
Upstream sequence
cagaggaaaaactaggaaacttagaggattgatccaggagttctttgtttttgtttttttgttttttggttttttttttttgagacagagtcttgctctg
Downstream sequence
tcacccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcccgagtagctggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate