Basic Information
VIS ID
TVIS30002642
Fusion event
HIV-LOC107985080 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
14303519/14400202 (Hg38)
End
14303519/14400202 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA17A
Target gene
LOC107985080
Nearest miRNA
hsa-mir-1253/Upstream/856556; hsa-mir-10226/Downstream/851425;
Nearest TSS
ENST00000595228/Upstream/26063; ENST00000455092/Downstream/325527;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/54798, chr17-CpG: 77/Downstream/860411
Nearby gene
HS3ST3B1(No orient, 50798)
Upstream sequence
GTCTAGTAAAACAGGGAAATGATCAGATTCAGAACCTGGAACATAAACCAACAAGGACCTCTATGCACAGCTATGGAATTGTAAGCTATAGCATTTTAAC
Downstream sequence
TTAATTAAGAAGGAGAAAAAAACATGAAGTAAAGCTGTTTGAAGAAAACGGAAAAGTGCATTTTGTATGCTGGAGCCCCATGGTTTCCCTGCTGGGCTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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