Basic Information
VIS ID
TVIS30002648
Fusion event
HIV-PIGS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
26892144/28565126 (Hg38)
End
26892144/28565126 (Hg38)
Orient
-
Location type
Intronic
Target gene
PIGS
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-941 ; hsa-mir-877-3p ; hsa-mir-331-3p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-let-7e-5p ; hsa-mir-3157-5p ; hsa-mir-516b-5p ; hsa-mir-6807-5p ; hsa-mir-1257 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-4790-3p ; hsa-mir-125a-3p ; hsa-mir-1273d ; hsa-mir-1200 ; hsa-mir-767-5p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-3065-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-8485 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-1299 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-1180/Upstream/204392; hsa-mir-10226/Downstream/296243;
Nearest TSS
ENST00000595228/Upstream/1465; ENST00000585189/Downstream/6378;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/12357, chr17-CpG: 64/Downstream/5961
Upstream sequence
tatgtgaagaaagagaaagaaaacttaaaagtattggaaagaaacagataaaatggccactttgaagtagcataattatttctcaagaaaatcagagaac
Downstream sequence
caactgaaaaactattagaactagcaacagttcaataagatgactagatacaaggatatgcaagaatcaatacccgcataaataccagcaatatccaatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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