VISDB Viral Integration Site DataBase

VIS ID

TVIS30002652

Fusion event

HIV-MYO18A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

27460485/29133467 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-193b-3p ; hsa-mir-7850-5p ; hsa-mir-5584-3p ; hsa-mir-4529-3p ; hsa-mir-8058 ; hsa-mir-4520-2-3p ; hsa-mir-5009-5p ; hsa-mir-1269b ; hsa-mir-1269a ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-6839-5p ; hsa-mir-1299 ; hsa-mir-378j ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-1273h-5p ; hsa-mir-1288-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-30b-3p ; hsa-mir-3614-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4482-3p ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-4728-5p ; hsa-mir-4755-5p ; hsa-mir-5006-3p ; hsa-mir-623 ; hsa-mir-6500-3p ; hsa-mir-6511a-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6801-5p ; hsa-mir-6808-5p ; hsa-mir-6832-3p ; hsa-mir-6881-3p ; hsa-mir-6883-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-7159-3p ; hsa-mir-877-3p ; hsa-mir-940 ; hsa-mir-302c-5p ; hsa-mir-3126-5p ; hsa-mir-3649 ; hsa-mir-3938 ; hsa-mir-4257 ; hsa-mir-4752 ; hsa-mir-4780 ; hsa-mir-543 ; hsa-mir-6780b-3p ; hsa-mir-6833-5p ; hsa-mir-6847-5p ; hsa-mir-6861-3p ; hsa-mir-6873-5p ; hsa-mir-6875-5p ; hsa-mir-7847-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-1180/Upstream/271737; hsa-mir-10226/Downstream/257195;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/52426, chr17-CpG: 42/Downstream/32718

Upstream sequence

GTGGCCAACTGGCCTGACTCCCCACCCTTGGCCCCTTGTCCTCCTAACCCACTGCAGCCCCCAGGATCAGGGAGACCCAGTTCCAGCGGTCCCTCCACAG

Downstream sequence

CAGCCCACGTTCCAGGGGTGAGTCAAGGCAGCAGGGTGGTGGGAAGGGTGTGGAGGGGTTAACCCAGAGGGACACCAGCAGGACAAAAGGCAGCTCACCT