VISDB Viral Integration Site DataBase

VIS ID

TVIS30002653

Fusion event

HIV-NUFIP2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

27600975/29273957 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-590-3p ; hsa-mir-340-5p ; hsa-mir-186-5p ; hsa-mir-140-3p ; hsa-mir-128-3p ; hsa-mir-124-3p ; hsa-mir-221-3p ; hsa-mir-183-5p ; hsa-mir-34a-5p ; hsa-mir-103a-3p ; hsa-mir-101-3p ; hsa-mir-93-5p ; hsa-mir-33a-5p ; hsa-mir-32-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-744-5p ; hsa-mir-151a-5p ; hsa-mir-342-5p ; hsa-mir-484 ; hsa-mir-365a-3p ; hsa-mir-193a-3p ; hsa-mir-182-5p ; hsa-mir-10b-5p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-3065-5p ; hsa-mir-7849-3p ; hsa-mir-3162-5p ; hsa-mir-3163 ; hsa-mir-5584-5p ; hsa-mir-6750-5p ; hsa-mir-6822-5p ; hsa-mir-9500 ; hsa-mir-370-3p ; hsa-mir-6893-3p ; hsa-mir-4684-3p ; hsa-mir-455-5p ; hsa-mir-568 ; hsa-mir-874-3p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-552-3p ; hsa-mir-3074-3p ; hsa-mir-4729 ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-6804-3p ; hsa-mir-6871-3p ; hsa-mir-205-5p ; hsa-mir-126-5p ; hsa-mir-335-3p ; hsa-mir-4795-3p ; hsa-mir-5696 ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-3120-3p ; hsa-mir-5680 ; hsa-mir-7112-3p ; hsa-mir-8485 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-513a-5p ; hsa-mir-4700-3p ; hsa-mir-33b-5p ; hsa-mir-548m ; hsa-mir-203a-3p ; hsa-mir-1288-5p ; hsa-mir-4738-3p ; hsa-mir-224-5p ; hsa-mir-570-3p ; hsa-mir-651-3p ; hsa-mir-6126 ; hsa-mir-6864-5p ; hsa-mir-551b-5p ; hsa-mir-138-2-3p ; hsa-mir-145-5p ; hsa-mir-513a-3p ; hsa-mir-455-3p ; hsa-mir-641 ; hsa-mir-766-3p ; hsa-mir-513c-3p ; hsa-mir-1827 ; hsa-mir-548t-5p ; hsa-mir-3148 ; hsa-mir-3173-5p ; hsa-mir-3606-3p ; hsa-mir-3617-5p ; hsa-mir-4536-5p ; hsa-mir-2467-3p ; hsa-mir-5195-3p ; hsa-mir-548az-5p ; hsa-mir-6507-3p ; hsa-mir-6799-3p ; hsa-mir-508-5p ; hsa-mir-205-3p ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-942-3p ; hsa-mir-4802-3p ; hsa-mir-585-5p ; hsa-mir-26a-5p ; hsa-mir-218-5p ; hsa-mir-636 ; hsa-mir-1297 ; hsa-mir-4465 ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-302f ; hsa-mir-4679 ; hsa-mir-8070 ; hsa-mir-3646 ; hsa-mir-138-1-3p ; hsa-mir-6083 ; hsa-mir-196a-3p ; hsa-mir-4495 ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-8084 ; hsa-mir-4424 ; hsa-mir-1250-3p ; hsa-mir-595 ; hsa-mir-410-3p ; hsa-mir-219a-1-3p ; hsa-mir-571 ; hsa-mir-4311 ; hsa-mir-4301 ; hsa-mir-6832-3p ; hsa-mir-1229-5p ; hsa-mir-1225-5p ; hsa-mir-1273e ; hsa-mir-580-3p ; hsa-mir-6740-5p ; hsa-mir-503-3p ; hsa-mir-539-5p ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-892c-5p ; hsa-mir-6882-5p ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-23c ; hsa-mir-130a-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-5000-3p ; hsa-mir-4436a ; hsa-mir-4691-3p ; hsa-mir-548b-3p ; hsa-mir-4460 ; hsa-mir-4649-3p ; hsa-mir-4727-3p ; hsa-mir-4687-3p ; hsa-mir-7974 ; hsa-mir-187-5p ; hsa-mir-6730-5p ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-4639-3p ; hsa-mir-4714-3p ; hsa-mir-3677-5p ; hsa-mir-5682 ; hsa-mir-3928-3p ; hsa-mir-544b ; hsa-mir-6841-5p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-219b-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-939-3p ; hsa-mir-7113-5p ; hsa-mir-6849-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3145-5p ; hsa-mir-6753-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-4275 ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-4531 ; hsa-mir-4276 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-5693 ; hsa-mir-3973 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-409-3p ; hsa-mir-6739-3p ; hsa-mir-567 ; hsa-mir-935 ; hsa-mir-4781-3p ; hsa-mir-299-3p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-375 ; hsa-mir-552-5p ; hsa-mir-146b-3p ; hsa-mir-7976 ; hsa-mir-3145-3p ; hsa-mir-649 ; hsa-mir-490-3p ; hsa-mir-365b-3p ; hsa-mir-4711-5p ; hsa-mir-5579-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-526b-3p ; hsa-mir-106b-5p ; hsa-mir-3924 ; hsa-mir-656-3p ; hsa-mir-561-3p ; hsa-mir-3149 ; hsa-mir-1914-5p ; hsa-mir-4520-3p ; hsa-mir-4520-2-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-103b ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-6165 ; hsa-mir-3159 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-4433a-5p ; hsa-mir-186-3p ; hsa-mir-6838-3p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4524a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-92b-3p ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-4521 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428 ; hsa-mir-3121-3p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-489-3p ; hsa-mir-194-3p ; hsa-mir-4704-3p ; hsa-mir-125a-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-5094 ; hsa-mir-338-5p ; hsa-mir-582-5p ; hsa-mir-4732-5p ; hsa-mir-4451 ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-1244 ; hsa-mir-6782-5p ; hsa-mir-7856-5p ; hsa-mir-4477b ; hsa-mir-3926 ; hsa-mir-4753-5p ; hsa-mir-506-3p ; hsa-mir-1252-5p ; hsa-mir-4682 ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-3664-5p ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-646 ; hsa-mir-622 ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-193b-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p

Nearest miRNA

hsa-mir-1180/Upstream/412227; hsa-mir-10226/Downstream/116705;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/93368, chr17-CpG: 73/Downstream/18516

Upstream sequence

ACTTTCTACATAATACCTCCCTATCACAATGCTTCCTATAGCGAAATGTCCAGTTTTCCACAAGTTCTTAATTCCAAGTTGATTGAAAAAAAAATACTAC

Downstream sequence

TCACCAGCTCAGGGTATGAAAAAAAAATACTACTCACCAGCTCAGGGTATAGATGCAAAACCAAAGAGTCTGCCCTCTGTGAGCTTACTCTAGTAAGCAA