VISDB Viral Integration Site DataBase

VIS ID

TVIS30002661

Fusion event

HIV-SUZ12 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

30322966/31995947 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-19a-3p ; hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-138-5p ; hsa-mir-21-5p ; hsa-mir-30c-5p ; hsa-let-7e-5p ; hsa-mir-128-3p ; hsa-mir-200b-3p ; hsa-mir-571 ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548z ; hsa-mir-548ac ; hsa-mir-6505-5p ; hsa-mir-548bb-3p ; hsa-mir-19b-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-302e ; hsa-mir-3185 ; hsa-mir-487b-3p ; hsa-mir-200c-3p ; hsa-mir-423-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-140-3p ; hsa-mir-216a-3p ; hsa-mir-3681-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-942-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-141-5p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-320a

Nearest miRNA

hsa-mir-1180/Upstream/420426; hsa-mir-10226/Downstream/354162;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/58451, chr17-CpG: 114/Downstream/10997

Nearest cancer related gene

SUZ12(TSG, No orient, 0)

Upstream sequence

AAAGGAACTTTTTTTAAAAAAAAAAAAAGGAATCCGGAAATGTACAGGTTTTAAAATTATGTCACTTTAAAAGTTAACCAAGTTAggctggtggcggtcg

Downstream sequence

ctcacacctgtaatcctagcactttgcgaggcaggcgcattgcctgagttcaggagttcaagaccagtctggacagcatggtgaaacccggtctctacta