Basic Information
VIS ID
TVIS30002662
Fusion event
HIV-LRRC37B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
30340451/32013432 (Hg38)
End
30340451/32013432 (Hg38)
Orient
+
Location type
Intronic
Target gene
LRRC37B
Nearest miRNA
hsa-mir-1180/Upstream/437911; hsa-mir-10226/Downstream/336677;
Nearest TSS
ENST00000595228/Upstream/5396; ENST00000581786/Downstream/7573;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/5325, chr17-CpG: 61/Downstream/128881
Nearby gene
LRRC37B(No orient, 7704)
Upstream sequence
gttttttttatttttcttttaaatgtaatctgacagcatcttttaattaatgtgtgttggaccatttacatttaatacgattgataatgactggatttag
Downstream sequence
gtttcctattttattatttgttttctgattatctcttttttggggggtttcttctgtttcttttttctgcctacttttggattaattgaatattttttag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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