Basic Information
VIS ID
TVIS30002664
Fusion event
HIV-MYO1D integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
31060822/32733804 (Hg38)
End
31060822/32733804 (Hg38)
Orient
-
Location type
Intronic
Target gene
MYO1D
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-218-5p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-636 ; hsa-mir-1914-5p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-520f-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p
Nearest miRNA
hsa-mir-1180/Upstream/383602; hsa-mir-10226/Downstream/4299941;
Nearest TSS
ENST00000595228/Upstream/12669; ENST00000435733/Downstream/15201;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/214120, chr17-CpG: 78/Downstream/88598
Upstream sequence
ccccacagggtgaggggcagctttaggggttttttccttcactcagttaacttctgtattcactcagctcctggcttgtatatttcttacttttcgttag
Downstream sequence
ttcatggctagattcaagatgttgatttttatattttatctaacattttagttgttttcagttggctttagtgggcacctcattcaccatgttgccagaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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