Fusion event
HIV-chr17 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
33516421/35189402 (Hg38)
Nearest miRNA
hsa-mir-1180/Upstream/2839200; hsa-mir-10226/Downstream/1844343;
Upstream sequence
TTTGTGAAAGGTAAATAATAAAgaatttctgttcctagtaagagtaacttgtggcaaaacaataccatgacatacaaaaattgaaaaactgggcaaaact
Downstream sequence
taaacaatctgtttaaggcaccgagagccattaaggcagtgagaccaacaaaaagggaagcaccaaggaggaagcttaactttttggtaaagttgattcc
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.