Basic Information
VIS ID
TVIS30002674
Fusion event
HIV-LOC105371749 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
34836998/36481145 (Hg38)
End
34836998/36481145 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371749
Nearest miRNA
hsa-mir-1180/Upstream/4130943; hsa-mir-10226/Downstream/552600;
Nearest TSS
ENST00000595228/Upstream/41579; ENST00000619482/Downstream/5484;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/16233, chr17-CpG: 70/Downstream/1522
Nearby gene
ZNHIT3(No orient, 5473)
Upstream sequence
atttatcccatttgcttgttctttttttcttttttgctagctcctctcttttttattgaagtactACTCCACAATGCTGCCTTCTTTGAGACTAAGTACC
Downstream sequence
CGATGCCATTTTACCTCCACAGTGGAGATaataatattagaccatgtcacatatagtgtaagagtcttacctagtaacttctatttccctccatcatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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