Basic Information
VIS ID
TVIS30002679
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
36301681/37942136 (Hg38)
End
36301681/37942136 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/327097; hsa-mir-10226/Downstream/760126;
Nearest TSS
ENST00000595228/Upstream/17721; ENST00000616101/Downstream/45384;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/7498, chr17-CpG: 25/Downstream/36751
Nearby gene
TBC1D3(No orient, 6583)
Nearest cancer related gene
TBC1D3(OG, No orient, 6583)
Upstream sequence
GGCTTTGGCAATTTATTTTAtttttattgtggttatatatatatatatatataaaacataccatttaccatttgaactattttaaaaagtgtacaattag
Downstream sequence
tggcatgaagtacattcacaatattgtataaccatcaccactgtccatttccagaacttgttcatcatcccaaacagaaattctctatcccttttcttcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate